Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108275918Sex comb on midleg-like protein 2. (472 aa)    
Predicted Functional Partners:
LOC108259621
Polycomb protein SCMH1-like isoform X4.
  
  
 
0.902
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.876
LOC108280883
Polycomb complex protein BMI-1-B-like.
    
 0.826
bmi1
Polycomb complex protein BMI-1.
    
 0.826
LOC108261002
Chromobox protein homolog 8-like isoform X1.
    
 0.792
cbx8
Chromobox protein homolog 8.
    
 0.792
LOC108259424
Chromobox protein homolog 6-like.
    
 0.744
cbx2
Chromobox protein homolog 2 isoform X1.
    
 0.718
LOC108260285
E3 SUMO-protein ligase CBX4-like.
    
 0.687
cbx4
E3 SUMO-protein ligase CBX4.
    
 0.687
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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