Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lhfpl5Tetraspan membrane protein of hair cell stereocilia. (231 aa)    
Predicted Functional Partners:
LOC108263819
Protocadherin-15-like isoform X1.
   
 0.798
TMC1
Transmembrane channel-like protein.
   
 0.781
LOC108273410
Protocadherin-15-like isoform X2.
   
 0.716
cib2
Calcium and integrin-binding family member 2.
     
 0.699
LOC108259782
Transmembrane channel-like protein.
   
 0.666
cdh23
Cadherin-23.
    
 0.636
cdhr5
Cadherin-related family member 5 isoform X1.
   
 0.602
LOC108270552
Cadherin-related family member 5-like isoform X2.
   
 0.602
LOC108255389
Transmembrane channel-like protein.
     
 0.592
cib3
Calcium and integrin-binding family member 3.
     
 0.589
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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