Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pick1PRKCA-binding protein. (408 aa)    
Predicted Functional Partners:
LOC108260487
Glutamate receptor 2 isoform X1.
    
 0.979
gria2
Glutamate receptor 2 isoform X1.
    
 0.979
tspan7
Tetraspanin.
    
 0.972
nhsl2
LOW QUALITY PROTEIN: NHS-like protein 2.
    
   0.964
tpt1
Translationally-controlled Tumor protein; Belongs to the TCTP family.
    
   0.964
LOC108265196
LOW QUALITY PROTEIN: glutamate receptor-interacting protein 2-like.
    
 0.864
grip1
Glutamate receptor-interacting protein 1 isoform X2.
    
 0.864
ccdc62
Coiled-coil domain-containing protein 62 isoform X5.
      
 0.861
ica1
Islet cell autoantigen 1 isoform X2.
   
 
 0.830
LOC108272898
Islet cell autoantigen 1-like isoform X1.
   
 
 0.830
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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