Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272257caM kinase-like vesicle-associated protein. (396 aa)    
Predicted Functional Partners:
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
   
 0.525
calm2
Calmodulin; Belongs to the calmodulin family.
    
 0.509
LOC108263280
Calmodulin.
    
 0.509
LOC108258233
Calmodulin.
    
 0.509
LOC108270185
Myosin light chain 1/3, skeletal muscle isoform-like; Belongs to the calmodulin family.
    
 0.509
LOC108279128
Calmodulin.
    
 0.509
calm3
Calmodulin 3.
    
 0.509
wdr90
WD repeat-containing protein 90.
   
 
 0.455
ppm1e
Protein phosphatase 1E.
   
 0.435
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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