STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100304649Granzyme B; Belongs to the peptidase S1 family. (253 aa)    
Predicted Functional Partners:
LOC108274430
Chymotrypsin A-like; Belongs to the peptidase S1 family.
  
0.578
LOC108277669
Chymotrypsin-like protease CTRL-1; Belongs to the peptidase S1 family.
  
0.541
LOC108264774
Lysyl oxidase homolog 1-like.
    
 0.519
LOC108277494
Kunitz-type protease inhibitor 2-like.
    
 0.516
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
    
 0.498
LOC100335032
Myeloperoxidase isoform X1.
   
 0.489
LOC108277410
Cell adhesion molecule 1-like isoform X3.
    
 0.480
LOC108280710
Perforin-1-like.
   
 0.463
LOC108267231
Uncharacterized protein LOC108267231.
    
 0.449
ambp
Protein AMBP.
   
 0.446
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.