Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
edrf1Erythroid differentiation-related factor 1. (1233 aa)    
Predicted Functional Partners:
ppfibp1
Liprin-beta-1 isoform X4.
      
 0.919
hspbp1
Hsp70-binding protein 1.
   
 
 0.908
ttc4
Tetratricopeptide repeat protein 4.
    
   0.858
LOC108277957
Cysteine and histidine-rich domain-containing protein 1-like.
    
   0.686
chordc1
Cysteine and Histidine-rich domain-containing protein 1.
    
   0.686
plpp6
Phospholipid phosphatase 6.
      
 0.652
hikeshi
Protein Hikeshi.
      
 0.628
ttc14
Tetratricopeptide repeat protein 14 isoform X1.
      
 0.628
LOC108277370
Uncharacterized protein LOC108277370.
      
 0.614
LOC108279739
Liprin-beta-1-like.
      
 0.581
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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