LOC108262748 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108262748

Ankyrin repeat domain-containing protein 2-like. (265 aa)

Predicted Functional Partners:

cops2

0.617

ENSIPUP00000000226

0.605

ccn2

0.592

ENSIPUP00000027552

0.574

asb12

0.567

LOC108270736

0.548

myoz2

0.534

LOC108267175

0.534

leng8

0.524

LOC108261065

0.517

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000000226	ENSIPUP00000027552	ENSIPUP00000000226	ENSIPUP00000027552	annotation not available	annotation not available	0.570
ENSIPUP00000000226	LOC108262748	ENSIPUP00000000226	ENSIPUP00000001213	annotation not available	Ankyrin repeat domain-containing protein 2-like.	0.605
ENSIPUP00000000226	asb12	ENSIPUP00000000226	ENSIPUP00000020418	annotation not available	Ankyrin repeat and SOCS box protein 12 isoform X2.	0.447
ENSIPUP00000000226	cops2	ENSIPUP00000000226	ENSIPUP00000030544	annotation not available	COP9 signalosome complex subunit 2 isoform X2.	0.753
ENSIPUP00000027552	ENSIPUP00000000226	ENSIPUP00000027552	ENSIPUP00000000226	annotation not available	annotation not available	0.570
ENSIPUP00000027552	LOC108262748	ENSIPUP00000027552	ENSIPUP00000001213	annotation not available	Ankyrin repeat domain-containing protein 2-like.	0.574
ENSIPUP00000027552	asb12	ENSIPUP00000027552	ENSIPUP00000020418	annotation not available	Ankyrin repeat and SOCS box protein 12 isoform X2.	0.486
LOC108261065	LOC108262748	ENSIPUP00000036085	ENSIPUP00000001213	Telethonin-like.	Ankyrin repeat domain-containing protein 2-like.	0.517
LOC108261065	LOC108267175	ENSIPUP00000036085	ENSIPUP00000030294	Telethonin-like.	Myozenin-2-like.	0.745
LOC108261065	LOC108270736	ENSIPUP00000036085	ENSIPUP00000016871	Telethonin-like.	Myomesin-2-like isoform X4.	0.402
LOC108261065	myoz2	ENSIPUP00000036085	ENSIPUP00000026352	Telethonin-like.	Myozenin-2.	0.633
LOC108262748	ENSIPUP00000000226	ENSIPUP00000001213	ENSIPUP00000000226	Ankyrin repeat domain-containing protein 2-like.	annotation not available	0.605
LOC108262748	ENSIPUP00000027552	ENSIPUP00000001213	ENSIPUP00000027552	Ankyrin repeat domain-containing protein 2-like.	annotation not available	0.574
LOC108262748	LOC108261065	ENSIPUP00000001213	ENSIPUP00000036085	Ankyrin repeat domain-containing protein 2-like.	Telethonin-like.	0.517
LOC108262748	LOC108267175	ENSIPUP00000001213	ENSIPUP00000030294	Ankyrin repeat domain-containing protein 2-like.	Myozenin-2-like.	0.534
LOC108262748	LOC108270736	ENSIPUP00000001213	ENSIPUP00000016871	Ankyrin repeat domain-containing protein 2-like.	Myomesin-2-like isoform X4.	0.548
LOC108262748	asb12	ENSIPUP00000001213	ENSIPUP00000020418	Ankyrin repeat domain-containing protein 2-like.	Ankyrin repeat and SOCS box protein 12 isoform X2.	0.567
LOC108262748	ccn2	ENSIPUP00000001213	ENSIPUP00000015894	Ankyrin repeat domain-containing protein 2-like.	Connective Tissue growth factor.	0.592
LOC108262748	cops2	ENSIPUP00000001213	ENSIPUP00000030544	Ankyrin repeat domain-containing protein 2-like.	COP9 signalosome complex subunit 2 isoform X2.	0.617
LOC108262748	leng8	ENSIPUP00000001213	ENSIPUP00000010313	Ankyrin repeat domain-containing protein 2-like.	Leukocyte receptor cluster member 8.	0.524