Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC108278538Non-canonical poly(A) RNA polymerase PAPD7-like. (770 aa)    
Predicted Functional Partners:
zcchc7
Zinc finger CCHC domain-containing protein 7.
   
 0.925
tent4b
Non-canonical poly(A) RNA polymerase PAPD5.
  
  
 
0.903
LOC108273366
Non-canonical poly(A) RNA polymerase PAPD7-like isoform X1.
  
  
 
0.902
mtrex
Superkiller viralicidic activity 2-like 2.
   
 0.831
exosc10
Exosome component 10.
   
 0.827
znfx1
NFX1-type zinc finger-containing protein 1.
    
 
 0.676
exosc5
Exosome complex component RRP46.
   
 0.644
pum3
Pumilio homolog 3.
   
   0.635
skiv2l
Helicase SKI2W isoform X2.
   
 0.613
cnot9
Cell differentiation protein rcd1-like protein.
    
 
 0.595
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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