cited1 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108258957	cited1	ENSIPUP00000020253	ENSIPUP00000001234	Insulin receptor substrate 2-like.	Cbp/p300-interacting transactivator 1 isoform X1.	0.593
LOC108259383	LOC108272975	ENSIPUP00000016935	ENSIPUP00000033760	CREB-binding protein-like isoform X3.	Histone acetyltransferase p300-like isoform X2.	0.985
LOC108259383	LOC108273944	ENSIPUP00000016935	ENSIPUP00000001195	CREB-binding protein-like isoform X3.	Histone acetyltransferase p300-like isoform X6.	0.985
LOC108259383	cited1	ENSIPUP00000016935	ENSIPUP00000001234	CREB-binding protein-like isoform X3.	Cbp/p300-interacting transactivator 1 isoform X1.	0.691
LOC108259383	esr1	ENSIPUP00000016935	ENSIPUP00000028831	CREB-binding protein-like isoform X3.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily.	0.798
LOC108267420	cited1	ENSIPUP00000001016	ENSIPUP00000001234	Insulin receptor substrate 2-B-like.	Cbp/p300-interacting transactivator 1 isoform X1.	0.593
LOC108272975	LOC108259383	ENSIPUP00000033760	ENSIPUP00000016935	Histone acetyltransferase p300-like isoform X2.	CREB-binding protein-like isoform X3.	0.985
LOC108272975	LOC108279275	ENSIPUP00000033760	ENSIPUP00000018515	Histone acetyltransferase p300-like isoform X2.	CREB-binding protein-like isoform X2.	0.985
LOC108272975	cited1	ENSIPUP00000033760	ENSIPUP00000001234	Histone acetyltransferase p300-like isoform X2.	Cbp/p300-interacting transactivator 1 isoform X1.	0.653
LOC108272975	esr1	ENSIPUP00000033760	ENSIPUP00000028831	Histone acetyltransferase p300-like isoform X2.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily.	0.830
LOC108273944	LOC108259383	ENSIPUP00000001195	ENSIPUP00000016935	Histone acetyltransferase p300-like isoform X6.	CREB-binding protein-like isoform X3.	0.985
LOC108273944	LOC108279275	ENSIPUP00000001195	ENSIPUP00000018515	Histone acetyltransferase p300-like isoform X6.	CREB-binding protein-like isoform X2.	0.985
LOC108273944	cited1	ENSIPUP00000001195	ENSIPUP00000001234	Histone acetyltransferase p300-like isoform X6.	Cbp/p300-interacting transactivator 1 isoform X1.	0.653
LOC108273944	esr1	ENSIPUP00000001195	ENSIPUP00000028831	Histone acetyltransferase p300-like isoform X6.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily.	0.830
LOC108278674	cited1	ENSIPUP00000017930	ENSIPUP00000001234	Insulin receptor substrate 2-B-like isoform X1.	Cbp/p300-interacting transactivator 1 isoform X1.	0.593
LOC108279275	LOC108272975	ENSIPUP00000018515	ENSIPUP00000033760	CREB-binding protein-like isoform X2.	Histone acetyltransferase p300-like isoform X2.	0.985
LOC108279275	LOC108273944	ENSIPUP00000018515	ENSIPUP00000001195	CREB-binding protein-like isoform X2.	Histone acetyltransferase p300-like isoform X6.	0.985
LOC108279275	cited1	ENSIPUP00000018515	ENSIPUP00000001234	CREB-binding protein-like isoform X2.	Cbp/p300-interacting transactivator 1 isoform X1.	0.691
LOC108279275	esr1	ENSIPUP00000018515	ENSIPUP00000028831	CREB-binding protein-like isoform X2.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily.	0.798
cenpp	cited1	ENSIPUP00000016226	ENSIPUP00000001234	Centromere protein P.	Cbp/p300-interacting transactivator 1 isoform X1.	0.526