STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000001237Interferon-induced very large GTPase 1-like. (502 aa)    
Predicted Functional Partners:
fancm
Fanconi anemia group M protein.
    
 0.578
mus81
Crossover junction endonuclease MUS81.
    
 0.527
pold2
DNA polymerase delta subunit 2.
    
 0.506
ddx20
Putative ATP-dependent RNA helicase DDX20; Belongs to the DEAD box helicase family.
   
 0.498
pold1
DNA polymerase.
    
 0.472
wrn
Werner syndrome ATP-dependent helicase isoform X1.
     
 0.465
smn1
Survival motor neuron protein 1 isoform X1.
    
 0.458
ubxn7
UBX domain-containing protein 7.
     
 0.449
ENSIPUP00000032963
annotation not available
  
     0.446
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.432
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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