Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
l3mbtl2Lethal(3)malignant brain tumor-like protein 2. (816 aa)    
Predicted Functional Partners:
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.976
LOC108257787
Transcription factor E2F6-like isoform X2.
    
 0.972
pcgf6
Polycomb group RING finger protein 6 isoform X1.
    
 0.962
wdr5
WD repeat-containing protein 5.
    
 
 0.956
yaf2
YY1-associated factor 2.
    
 0.953
pcgf1
Polycomb group RING finger protein 1 isoform X1.
    
 0.923
mrgbp
MRG/MORF4L-binding protein.
    
 
 0.920
cbx3-2
Chromobox protein-like protein 3 isoform X2.
    
 0.884
LOC108270087
MAX gene-associated protein-like isoform X2.
   
 0.875
LOC108258088
MAX gene-associated protein-like isoform X1.
   
 0.875
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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