Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
chadlChondroadherin-like protein. (746 aa)    
Predicted Functional Partners:
LOC108280152
Apoptosis facilitator Bcl-2-like protein 14 isoform X1.
      
 0.675
LOC108263940
Apoptosis facilitator Bcl-2-like protein 14.
      
 0.675
LOC108280570
Homer protein homolog 3-like isoform X1.
    
 0.660
LOC108270816
Homer protein homolog 3-like.
    
 0.660
LOC108280027
Uncharacterized protein LOC108280027.
      
0.547
LOC108276397
Sarcolemmal membrane-associated protein-like isoform X1.
    
 0.518
thoc2
THO complex subunit 2 isoform X2.
    
 
 0.512
LOC108274166
Neurexin-1a isoform X4.
   
 0.505
nrxn3
Neurexin 3.
   
 0.505
ENSIPUP00000016712
annotation not available
   
 0.505
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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