Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
apomApolipoprotein M. (186 aa)    
Predicted Functional Partners:
gpank1
G patch domain and ankyrin repeat-containing protein 1.
      
 0.872
apob
Apolipoprotein B-100.
   
 
 0.819
spp2
Secreted phosphoprotein 24.
   
  
 0.810
APOH
Beta-2-glycoprotein 1.
   
  
 0.804
cetp
Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
     
 0.771
LOC108257096
Apolipoprotein A-I-like isoform X1.
   
 
 0.766
LOC108266743
Apolipoprotein A-I-like.
   
 
 0.766
LOC108266736
Apolipoprotein A-I-like.
   
 
 0.766
LOC108257904
Apolipoprotein B-100-like.
   
 
 0.729
apoc1
Apolipoprotein C-I.
   
 
 0.719
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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