Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108278736capZ-interacting protein-like isoform X3. (308 aa)    
Predicted Functional Partners:
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.755
washc5
WASH complex subunit strumpellin.
   
 
 0.754
washc3
WASH complex subunit CCDC53.
    
 
 0.746
washc1
WAS protein family homolog 1 isoform X1.
    
 
 0.729
washc4
WASH complex subunit 7.
   
 
 0.727
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.690
smc5
Structural maintenance of chromosomes protein 5.
   
 
 0.647
slf1
SMC5-SMC6 complex localization factor protein 1 isoform X1.
    
 
 0.634
smc6
Structural maintenance of chromosomes protein 6.
   
 
 0.611
nsmce1
Non-structural maintenance of chromosomes element 1 homolog isoform X1.
    
 
 0.582
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.