Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC100304514Natural resistance-associated macrophage protein medium transcript. (550 aa)    
Predicted Functional Partners:
vps26a
Vacuolar protein sorting-associated protein 26A.
    
 
 0.803
snx3
Sorting nexin-3 isoform X1.
    
 
 0.742
snx12
Sorting nexin-12 isoform X1.
    
 
 0.742
LOC108258991
NEDD4 family-interacting protein 2-like.
   
 
 0.740
LOC108274678
NEDD4 family-interacting protein 1-like protein.
   
 
 0.730
ndfip1
Nedd4 family-interacting protein 1-like.
   
 
 0.730
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.700
LOC108266665
Cytochrome b reductase 1.
      
 0.689
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
   0.680
usp18
Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family.
      
 0.649
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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