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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf2Protein YIPF. (305 aa)    
Predicted Functional Partners:
yipf6
Protein YIPF.
   
 
 0.982
yif1b
Protein YIF1B.
   
  
 0.938
yipf3
Protein YIPF3.
   
  
 0.934
yipf4
Protein YIPF.
   
 
 0.915
slc38a7
Putative sodium-coupled neutral amino acid transporter 7.
      
 0.754
yipf7
Protein YIPF.
   
 
 0.723
yipf5
Protein YIPF.
   
 
 0.723
selenos
Selenoprotein S.
   
 
 0.708
LOC108273526
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.704
tvp23b
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.704
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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