Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lman2Vesicular integral-membrane protein VIP36 isoform X2. (333 aa)    
Predicted Functional Partners:
tmed10
Transmembrane emp24 domain-containing protein 10.
   
 0.817
sec23a
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.750
LOC108277309
Transmembrane emp24 domain-containing protein 2-like.
   
 0.745
TMED2
Transmembrane emp24 domain-containing protein 2.
   
 0.745
mansc1
MANSC domain-containing protein 1.
    
 0.704
golga2
Golgin subfamily A member 2 isoform X1.
   
 
 0.670
bet1
BET1 homolog.
   
 
 0.644
sec13
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
   
 
 0.637
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 
 0.636
lman1
Protein ERGIC-53 isoform X1.
   
 0.636
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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