Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108265068Copine-5-like. (542 aa)    
Predicted Functional Partners:
rnaseh2b
Ribonuclease H2 subunit B.
   
 
 0.556
sergef
Secretion-regulating guanine nucleotide exchange factor isoform X1.
   
  
 0.498
LOC108259296
Fin bud initiation factor-like.
      
 0.484
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.482
LOC108275358
Unique cartilage matrix-associated protein-like.
      
 0.480
ush1c
Harmonin.
      
 0.473
znf536
Zinc finger protein 536 isoform X1.
      
 0.473
cd81
Tetraspanin.
      
 0.429
zfc3h1
LOW QUALITY PROTEIN: zinc finger C3H1 domain-containing protein.
      
 0.400
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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