Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmed9Transmembrane emp24 domain-containing protein 9. (222 aa)    
Predicted Functional Partners:
tmed10
Transmembrane emp24 domain-containing protein 10.
   
 0.993
LOC108277309
Transmembrane emp24 domain-containing protein 2-like.
   
 0.968
TMED2
Transmembrane emp24 domain-containing protein 2.
   
 0.968
LOC100304967
Surfeit locus protein 4.
   
 0.911
surf4
Surfeit locus protein 4.
   
 0.911
LOC108271219
Transmembrane emp24 domain-containing protein 3-like.
   
 0.899
LOC100304977
TIR-containing adaptor molecule.
   
 0.899
LOC108265697
Transmembrane emp24 domain-containing protein 7-like.
   
 0.899
naglu
alpha-N-acetylglucosaminidase.
    
   0.875
copb1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.863
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.