Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arl8bADP ribosylation factor like GTPase 8B. (249 aa)    
Predicted Functional Partners:
plekhm1
Pleckstrin homology domain-containing family M member 1.
    
 
 0.841
rab2a
Ras-related protein Rab-2A.
   
 
 0.684
rubcn
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X2.
    
 0.644
lamtor1
Ragulator complex protein LAMTOR1.
   
 0.633
tmem192
Transmembrane protein 192.
    
 0.612
trpm2
Transient receptor potential cation channel subfamily M member 2.
   
 
 0.604
itsn2
LOW QUALITY PROTEIN: intersectin-2.
    
 0.585
ENSIPUP00000019729
annotation not available
    
 0.585
LOC108269989
Intersectin-2-like isoform X1.
    
 0.585
ENSIPUP00000002531
annotation not available
   
 0.582
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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