Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
akirin1Akirin-1. (182 aa)    
Predicted Functional Partners:
psma5
Proteasome subunit alpha type.
   
   0.611
psmb2
Proteasome subunit beta.
    
   0.603
psma3
Proteasome subunit alpha type.
    
   0.602
psma4
Proteasome subunit alpha type.
    
   0.602
adgrd1
Adhesion G-protein coupled receptor D1 isoform X2; Belongs to the G-protein coupled receptor 2 family.
   
 
 0.592
ran
GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.592
smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.
    
 
 0.591
LOC108268163
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
    
 
 0.591
smarcd1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.
    
 
 0.591
smarcd2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.
    
 
 0.591
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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