STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem177Transmembrane protein 177. (310 aa)    
Predicted Functional Partners:
LOC108255235
Vacuolar protein sorting-associated protein 72 homolog.
    
 
 0.848
dmap1
DNA methyltransferase 1-associated protein 1.
   
 
 0.840
actr6
Actin-related protein 6 isoform X1; Belongs to the actin family.
   
 
 0.839
yeats4
YEATS domain-containing protein 4.
   
 
 0.837
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.833
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.833
cfdp1
Craniofacial development protein 1; May play a role during embryogenesis.
    
 
 0.796
morf4l1
Mortality factor 4-like protein 1.
    
 
 0.715
ep400
E1A-binding protein p400 isoform X6.
    
 
 0.714
srcap
Helicase SRCAP isoform X2.
    
 
 0.714
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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