Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glygGlycogenin-1. (325 aa)    
Predicted Functional Partners:
gbe1
1,4-alpha-glucan-branching enzyme.
   
 0.994
gys1
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
   
 0.989
gys2
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
   
 0.989
LOC108258649
UTP--glucose-1-phosphate uridylyltransferase.
   
 
 0.929
LOC108269784
UTP--glucose-1-phosphate uridylyltransferase.
   
 
 0.929
gyg2
Glycogenin-2.
  
  
 
0.903
LOC108278056
Glycogenin-1-like.
  
  
 
0.901
LOC108256475
Ectonucleotide pyrophosphatase/phosphodiesterase family member 1-like isoform X1.
     
  0.900
LOC108274609
Ectonucleotide pyrophosphatase/phosphodiesterase family member 3-like.
     
  0.900
LOC108272764
Glycogen debranching enzyme-like.
   
 0.866
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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