Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RELNReelin. (3329 aa)    
Predicted Functional Partners:
LOC108256143
Integrin alpha-3-like; Belongs to the integrin alpha chain family.
    
 0.924
itga3
Integrin alpha-3 isoform X2; Belongs to the integrin alpha chain family.
    
 0.924
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.908
LOC108272272
Low-density lipoprotein receptor-related protein 8-like isoform X1.
    
 0.908
itgb1-2
Integrin beta; Belongs to the integrin beta chain family.
    
 0.908
vldlr
Very low-density lipoprotein receptor isoform X1.
    
 0.893
dab1
Disabled homolog 1 isoform X2.
    
 0.867
ldlr
Low-density lipoprotein receptor.
    
 0.828
LRP8
Low-density lipoprotein receptor-related protein 8-like.
    
 0.828
LOC108273208
Low-density lipoprotein receptor-like.
    
 0.828
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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