Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108277448Tumor necrosis factor-like. (244 aa)    
Predicted Functional Partners:
tnfrsf1a
Tumor necrosis factor receptor superfamily member 1A.
    
 0.975
LOC108276487
Tumor necrosis factor receptor superfamily member 1A-like.
    
 0.957
LOC108265192
Uncharacterized protein LOC108265192.
   
 0.952
LOC108265273
Tumor necrosis factor receptor superfamily member 14-like.
     
  0.907
LOC108255052
Tumor necrosis factor receptor superfamily member 1B-like.
     
 0.903
LOC108258817
Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.
  
  
  0.638
il10
Interleukin-10.
   
  
 0.620
LOC108268265
Uncharacterized protein LOC108268265 isoform X1.
    
 0.601
plekhg7
Pleckstrin homology domain-containing family G member 7 isoform X2.
    
 0.601
plekhg5
Pleckstrin homology domain-containing family G member 5 isoform X7.
    
 0.601
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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