Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpb1Carboxypeptidase B. (416 aa)    
Predicted Functional Partners:
agt
Angiotensinogen; Belongs to the serpin family.
   
 
 0.653
cpn1
Carboxypeptidase N catalytic chain.
   
 
 0.636
sgpl1
Sphingosine-1-phosphate lyase 1.
   
  
 0.565
LOC108274430
Chymotrypsin A-like; Belongs to the peptidase S1 family.
   
 
 0.562
cpe
Carboxypeptidase E.
   
 
 0.559
heca
Headcase protein homolog isoform X1.
   
  
 0.524
serpind1
Heparin cofactor 2; Belongs to the serpin family.
   
 
 0.520
plg
Plasminogen; Belongs to the peptidase S1 family.
   
 
 0.516
serpinc1
Antithrombin-III; Belongs to the serpin family.
   
 
 0.502
LOC108262381
Pancreatic alpha-amylase-like.
   
  
 0.499
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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