Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108255636Protein FAM111B-like isoform X1. (665 aa)    
Predicted Functional Partners:
vps39
vam6/Vps39-like protein isoform X3.
      
 0.852
cmlo
Probable n-acetyltransferase camello isoform X1.
      
 0.758
LOC108271756
Probable N-acetyltransferase camello isoform X2.
      
 0.758
nup42
Nucleoporin-like protein 2.
     
 0.672
rdm1
RAD52 motif-containing protein 1.
      
 0.644
cpt2
Carnitine O-palmitoyltransferase 2, mitochondrial; Belongs to the carnitine/choline acetyltransferase family.
      
 0.628
rb1
Retinoblastoma-associated protein.
      
 0.615
dffb
DNAation factor subunit beta.
    
   0.610
LOC108276123
Putative Polycomb group protein ASXL1 isoform X1.
     
 0.582
sprtn
sprT-like domain-containing protein Spartan.
   
 
 0.566
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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