Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dopey1Protein dopey-1 isoform X3. (385 aa)    
Predicted Functional Partners:
ENSIPUP00000017642
annotation not available
 
     0.924
mon2
Protein MON2 homolog isoform X1.
   
 
 0.777
slc66a2
PQ-loop repeat-containing protein 1.
    
 
 0.670
hsp90b1
Endoplasmin.
    
   0.628
trap1
Heat shock protein 75 kDa, mitochondrial.
    
   0.607
cryzl1
Quinone oxidoreductase-like protein 1 isoform X4.
      
 0.562
wdr19
WD repeat-containing protein 19 isoform X1.
      
 0.523
pus7
Pseudouridylate synthase 7 homolog isoform X1.
      
 0.451
mcm3ap
Germinal-center associated nuclear protein.
   
  
 0.403
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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