Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dlx6Homeobox protein Dlx6a. (245 aa)    
Predicted Functional Partners:
dlx5
Homeobox protein DLX-5.
   
 
 0.855
edn1
Endothelin-1.
      
 0.578
fras1
Extracellular matrix protein FRAS1.
   
  
 0.558
hopx
Homeodomain-only protein.
     
 0.517
bmp4
Bone morphogenetic protein 4.
     
 0.517
LOC108262899
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.512
mecp2
methyl-CpG-binding protein 2 isoform X2.
      
 0.496
hand2
Heart- and neural crest derivatives-expressed protein 2.
    
 
 0.491
ednra
Endothelin-1 receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.489
LOC108276021
Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.
      
 0.475
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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