Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc90bCoiled-coil domain-containing protein 90B, mitochondrial. (256 aa)    
Predicted Functional Partners:
fam32a
Protein FAM32A.
   
  
 0.919
LOC108268156
Mitochondrial calcium uniporter regulator 1-like isoform X2.
   
   0.874
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 
 0.784
trmt1l
TRMT1-like protein isoform X5; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.758
alg6
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.667
rab30
Ras-related protein Rab-30.
      
 0.666
tmx1
Thioredoxin-related transmembrane protein 1.
      
 0.664
pcf11
pre-mRNA cleavage complex 2 protein Pcf11.
      
 0.629
wdr74
WD repeat-containing protein 74 isoform X1.
      
 0.629
LOC108274859
Glutathione S-transferase A-like; Belongs to the GST superfamily.
    
   0.606
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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