Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tspan31Tetraspanin-31; Belongs to the tetraspanin (TM4SF) family. (213 aa)    
Predicted Functional Partners:
tspan7
Tetraspanin.
   
  
 0.744
tspan6
Tetraspanin.
   
  
 0.744
tspan5
Tetraspanin.
      
 0.668
cd151
Tetraspanin.
      
 0.633
tsn17
Tetraspanin.
      
 0.488
upk1a
Tetraspanin.
      
 0.481
sdcb1
Syntenin-1.
    
 0.439
sdcbp
Syntenin-1.
    
 0.439
LOC108275485
Tetraspanin.
      
 0.427
sdf4
45 kDa calcium-binding protein.
   
    0.412
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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