Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dlx5Homeobox protein DLX-5. (286 aa)    
Predicted Functional Partners:
dlx2
Homeobox protein DLX-2.
   
 
 0.982
LOC108258656
Homeobox protein Dlx2b-like.
   
 
 0.871
dlx6
Homeobox protein Dlx6a.
   
 
 0.855
LOC108278510
Homeobox protein MSX-2-like.
   
 0.698
LOC108264167
Bone morphogenetic protein 2-like.
     
 0.665
LOC108270435
Bone morphogenetic protein 2-like.
     
 0.665
bmp4
Bone morphogenetic protein 4.
     
 0.665
LOC108258023
Bone morphogenetic protein 2-like.
     
 0.665
LOC108266192
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.657
fgf4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.657
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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