STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlx5Homeobox protein DLX-5. (286 aa)    
Predicted Functional Partners:
dlx6
Homeobox protein Dlx6a.
  
 
0.828
LOC108278510
Homeobox protein MSX-2-like.
   
0.555
runx2
Runt-related transcription factor.
   
 
 0.504
runx1
Runt-related transcription factor.
   
 
 0.504
LOC108258149
Runt-related transcription factor.
   
 
 0.504
runx3
Runt-related transcription factor.
   
 
 0.504
sox5
Transcription factor SOX-5.
    
 
 0.503
cenpp
Centromere protein P.
      
 0.473
nyx
Nyctalopin.
      
 0.470
LOC108258409
Parvalbumin-7-like; Belongs to the parvalbumin family.
      
 0.461
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.