Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frmd4bFERM domain-containing protein 4B isoform X2. (971 aa)    
Predicted Functional Partners:
mdfic
myoD family inhibitor domain-containing protein.
    
 
 0.753
foxp1
Forkhead box protein P1 isoform X1.
      
 0.672
aanat
Serotonin N-acetyltransferase.
      
 0.668
LOC108275860
Forkhead box protein P1-B-like isoform X1.
      
 0.593
mitf
Microphthalmia-associated transcription factor isoform X1.
      
 0.587
opn3
Opsin-3.
      
 0.577
plekha5
Pleckstrin homology domain-containing family A member 5 isoform X1.
    
 
 0.559
LOC108273324
Cytohesin-2-like.
    
 
 0.533
LOC108276453
Cytohesin-2-like.
    
 
 0.509
LOC108268159
Cytohesin-2.
    
 
 0.496
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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