Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272974C-C chemokine receptor type 8-like; Belongs to the G-protein coupled receptor 1 family. (358 aa)    
Predicted Functional Partners:
LOC108268114
C-C motif chemokine.
   
 0.669
cxcl12
Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.546
LOC108259449
Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.546
LOC108260679
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.523
il10
Interleukin-10.
   
 
 0.489
ENSIPUP00000019218
annotation not available
   
 0.440
ENSIPUP00000019439
annotation not available
   
 0.440
LOC108270518
C-C motif chemokine 21a-like.
    
 0.426
LOC108280909
C-C motif chemokine 25-like.
    
 0.426
cxcr5
C-X-C chemokine receptor type 5; Belongs to the G-protein coupled receptor 1 family.
     
 0.419
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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