Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC108270125Ubiquitin thioesterase zranb1-B. (712 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.915
hectd1
E3 ubiquitin-protein ligase HECTD1 isoform X1.
   
 
 0.869
rps27a
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]
    
  0.815
uba52
ubiquitin-60S ribosomal protein L40 isoform X1.
    
  0.784
cttnbp2nl
CTTNBP2 N-terminal-like protein isoform X1.
    
 
 0.767
LOC108272146
CTTNBP2 N-terminal-like protein isoform X1.
    
 
 0.767
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
   0.739
pgam5
Serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X2.
    
 
 0.731
trip12
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.699
apc
Adenomatous polyposis coli protein isoform X1.
    
  0.674
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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