Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108254854C-C chemokine receptor type 4-like; Belongs to the G-protein coupled receptor 1 family. (355 aa)    
Predicted Functional Partners:
LOC108259863
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.575
gjd2
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.572
sirt2
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase.
      
 0.570
LOC108268114
C-C motif chemokine.
    
 0.485
LOC108277767
Complement C4-A-like.
    
 0.456
rad23b
UV excision repair protein RAD23 homolog B.
    
 0.451
rab6a
Ras-related protein Rab-6A isoform X1.
    
 0.432
nitr2
Novel immune-type receptor 2 precursor.
      
 0.422
nitr4
Novel immune-type receptor 4 isoform X1.
      
 0.422
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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