Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc69Coiled-coil domain-containing protein 69. (314 aa)    
Predicted Functional Partners:
rmi2
RecQ-mediated Genome instability protein 2.
    
 
 0.893
rmi1
recQ-mediated genome instability protein 1.
    
   0.789
lrrc17
Leucine-rich repeat-containing protein 17.
      
 0.615
LOC108269326
Armadillo repeat-containing protein 10-like.
      
 0.579
elp5
Elongator complex protein 5 isoform X2.
      
 0.575
LOC108275727
PRELI domain-containing protein 1, mitochondrial-like.
      
 0.543
prelid1
PRELI domain-containing protein 1, mitochondrial.
      
 0.543
tdrd3
Tudor domain-containing protein 3.
    
   0.513
srd5a3
Polyprenol reductase.
      
 0.488
LOC108263850
Polyadenylate-binding protein-interacting protein 2B-like.
      
 0.486
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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