Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108263833cGMP-dependent protein kinase. (683 aa)    
Predicted Functional Partners:
mrvi1
Protein MRVI1 isoform X3.
   
 0.963
ENSIPUP00000002253
annotation not available
   
 
 0.918
LOC108263740
Calcium-activated potassium channel subunit alpha-1 isoform X9.
   
 
 0.918
LOC108273132
Protein phosphatase 1 regulatory subunit.
    
 0.911
LOC108279504
Protein phosphatase 1 regulatory subunit 12A-like isoform X2.
    
 0.911
LOC108267996
Calcium-activated potassium channel subunit beta-3-like.
     
  0.906
pp1b
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.906
kcnmb4
Calcium-activated potassium channel subunit beta-4.
     
  0.906
LOC108269700
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.906
LOC108274218
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.906
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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