pcf11 protein (Ictalurus punctatus) - STRING interaction network

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Score

pcf11

pre-mRNA cleavage complex 2 protein Pcf11. (1489 aa)

Predicted Functional Partners:

clp1

0.999

cstf3

0.997

cpsf2

0.994

cpsf1

0.991

sympk

0.991

cpsf3

0.990

cstf2

0.983

LOC108260848

0.973

polr2a

0.960

cpsf4

0.946

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108260848	clp1	ENSIPUP00000033424	ENSIPUP00000024036	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	0.960
LOC108260848	cpsf1	ENSIPUP00000033424	ENSIPUP00000016882	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage and polyadenylation specificity factor subunit 1 isoform X2.	0.997
LOC108260848	cpsf2	ENSIPUP00000033424	ENSIPUP00000030926	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage and polyadenylation specificity factor subunit 2.	0.997
LOC108260848	cpsf3	ENSIPUP00000033424	ENSIPUP00000034975	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage and polyadenylation specificity factor subunit 3.	0.997
LOC108260848	cpsf4	ENSIPUP00000033424	ENSIPUP00000025408	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage and polyadenylation specificity factor subunit 4.	0.999
LOC108260848	cstf2	ENSIPUP00000033424	ENSIPUP00000026337	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage stimulation factor subunit 2 isoform X1.	0.996
LOC108260848	cstf3	ENSIPUP00000033424	ENSIPUP00000019590	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Cleavage stimulation factor subunit 3.	0.998
LOC108260848	pcf11	ENSIPUP00000033424	ENSIPUP00000001428	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	pre-mRNA cleavage complex 2 protein Pcf11.	0.973
LOC108260848	sympk	ENSIPUP00000033424	ENSIPUP00000035840	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	Symplekin.	0.999
clp1	LOC108260848	ENSIPUP00000024036	ENSIPUP00000033424	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	0.960
clp1	cpsf1	ENSIPUP00000024036	ENSIPUP00000016882	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage and polyadenylation specificity factor subunit 1 isoform X2.	0.908
clp1	cpsf2	ENSIPUP00000024036	ENSIPUP00000030926	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage and polyadenylation specificity factor subunit 2.	0.944
clp1	cpsf3	ENSIPUP00000024036	ENSIPUP00000034975	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage and polyadenylation specificity factor subunit 3.	0.938
clp1	cpsf4	ENSIPUP00000024036	ENSIPUP00000025408	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage and polyadenylation specificity factor subunit 4.	0.928
clp1	cstf2	ENSIPUP00000024036	ENSIPUP00000026337	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage stimulation factor subunit 2 isoform X1.	0.984
clp1	cstf3	ENSIPUP00000024036	ENSIPUP00000019590	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Cleavage stimulation factor subunit 3.	0.964
clp1	pcf11	ENSIPUP00000024036	ENSIPUP00000001428	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	pre-mRNA cleavage complex 2 protein Pcf11.	0.999
clp1	sympk	ENSIPUP00000024036	ENSIPUP00000035840	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	Symplekin.	0.829
cpsf1	LOC108260848	ENSIPUP00000016882	ENSIPUP00000033424	Cleavage and polyadenylation specificity factor subunit 1 isoform X2.	LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like.	0.997
cpsf1	clp1	ENSIPUP00000016882	ENSIPUP00000024036	Cleavage and polyadenylation specificity factor subunit 1 isoform X2.	Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...]	0.908