Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gm2aGanglioside GM2 activator. (196 aa)    
Predicted Functional Partners:
psap
Prosaposin isoform X2.
   
 
 0.831
hexa
Beta-hexosaminidase.
   
 0.831
hexb
Beta-hexosaminidase.
   
 0.831
etfa
Electron transfer flavoprotein subunit alpha, mitochondrial.
      
 0.761
sptlc1
Serine palmitoyltransferase 1.
     
 0.758
LOC108266864
Beta-galactosidase-like isoform X1; Belongs to the glycosyl hydrolase 35 family.
     
 0.711
glb1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
     
 0.711
LOC108275146
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.655
OSBPL8
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.655
galns
N-acetylgalactosamine-6-sulfatase.
     
 0.649
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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