Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc20Leucine-rich repeat-containing protein 20. (166 aa)    
Predicted Functional Partners:
lrrc30
Leucine-rich repeat-containing protein 30.
  
   
 0.869
asb16
Ankyrin repeat and SOCS box protein 16 isoform X3.
   
 0.768
LOC108275654
Leucine-rich repeat-containing protein 38-like.
      
 0.752
slitrk6
SLIT and NTRK-like protein 6.
      
 0.700
lrrc14b
Leucine-rich repeat-containing protein 14B.
      
 0.700
prrg2
Transmembrane Gamma-carboxyglutamic acid protein 2.
      
 0.681
osbpl7
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.678
osbpl6
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.677
tmem38a
Trimeric intracellular cation channel type A.
   
 
 0.658
asb10
Ankyrin repeat and SOCS box protein 10 isoform X1.
   
 0.651
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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