Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhx16Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2. (1054 aa)    
Predicted Functional Partners:
gpkow
G patch domain and KOW motifs-containing protein isoform X2.
    
 0.998
xab2
Pre-mRNA-splicing factor SYF1.
   
 0.982
cdc40
pre-mRNA-processing factor 17.
   
 0.982
dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
  0.981
sf3b2
Splicing factor 3B subunit 2.
   
 0.981
cwc22
pre-mRNA-splicing factor CWC22 homolog isoform X2.
   
 0.974
cwc27
Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X2.
   
 0.972
rnf113a
RING finger protein 113A.
   
 0.964
bud13
BUD13 homolog isoform X2.
   
 0.956
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.952
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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