Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108266221Transposon Ty3-I Gag-Pol polyprotein isoform X1. (506 aa)    
Predicted Functional Partners:
LOC108271627
Uncharacterized protein LOC108271627.
 
     0.600
fancm
Fanconi anemia group M protein.
    
 0.569
lin52
Protein lin-52 homolog.
    
 0.557
lin54
Protein lin-54 homolog isoform X1.
    
 0.554
lin9
Protein lin-9 homolog isoform X1.
    
 0.458
rbbp7
Histone-binding protein RBBP7 isoform X1.
    
 0.442
rbbp4
Histone-binding protein RBBP4.
    
 0.442
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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