Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zmynd12Zinc finger MYND domain-containing protein 12. (371 aa)    
Predicted Functional Partners:
cfap52
Cilia- and flagella-associated protein 52.
   
 
 0.895
LOC108266093
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
   
 
 0.883
c5h1orf194
Uncharacterized protein C1orf194 homolog.
   
 
 0.882
pacrg
Parkin coregulated gene protein.
    
 
 0.875
cfap44
Cilia- and flagella-associated protein 44 isoform X2.
   
 
 0.871
ribc1
RIB43A-like with coiled-coils protein 1 isoform X1.
   
 
 0.870
ttc29
Tetratricopeptide repeat protein 29 isoform X1.
   
 
 0.862
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
   
 
 0.858
efhb
EF-hand domain-containing family member B.
   
   0.846
cfap43
Cilia- and flagella-associated protein 43 isoform X1.
   
 
 0.840
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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