STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108266052PR domain zinc finger protein 2-like. (1546 aa)    
Predicted Functional Partners:
camkmt
Calmodulin-lysine N-methyltransferase isoform X2.
     
 0.670
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
     
  0.650
plod3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
     
  0.650
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
     
  0.650
brca2
Breast cancer type 2 susceptibility protein isoform X1.
      
 0.629
reck
Reversion-inducing cysteine-rich protein with Kazal motifs.
      
 0.629
brca1
Breast cancer type 1 susceptibility protein isoform X2.
      
 0.561
LOC108279029
Lymphocyte cytosolic protein 2-like.
     
 0.508
LOC108274654
Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like isoform X1.
   
 0.506
nsd1
Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific isoform X2.
   
 0.506
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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