Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plod2Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1. (750 aa)    
Predicted Functional Partners:
LOC108257422
Procollagen galactosyltransferase 1-like.
   
0.952
colgalt1
Procollagen galactosyltransferase 1.
   
0.952
LOC108265394
LOW QUALITY PROTEIN: procollagen galactosyltransferase 2-like.
   
0.952
cercam
Probable inactive glycosyltransferase 25 family member 3 isoform X1.
   
0.952
LOC108268058
Procollagen galactosyltransferase 2-like.
   
0.946
plod3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
  
  
 
0.918
plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
  
  
 
0.918
camkmt
Calmodulin-lysine N-methyltransferase isoform X2.
     
  0.900
ehmt2
Histone-lysine N-methyltransferase EHMT2.
    
  0.738
LOC108255843
Histone-lysine N-methyltransferase EHMT1-like isoform X1.
    
  0.738
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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