Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pald1Paladin. (865 aa)    
Predicted Functional Partners:
parp2
Poly [ADP-ribose] polymerase.
      
 0.851
acbd4
acyl-CoA-binding domain-containing protein 4 isoform X1.
      
 0.830
CHST8
Carbohydrate sulfotransferase.
      
 0.827
CHST8-2
Carbohydrate sulfotransferase.
      
 0.827
depdc4
DEP domain-containing protein 4.
      
 0.820
LOC108278536
Protein unc-119 homolog A-like.
    
 
 0.723
UNC119
Protein unc-119 homolog A.
    
 
 0.723
LOC108257022
Zinc finger protein 646-like isoform X1.
      
 0.700
LOC108273671
Zinc finger protein 646-like.
      
 0.700
LOC108265858
Protein FAM160B2-like isoform X1.
      
 0.695
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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