Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
npas3Neuronal PAS domain-containing protein 3 isoform X1. (973 aa)    
Predicted Functional Partners:
LOC108264157
Aryl hydrocarbon receptor nuclear translocator-like isoform X1.
   
 0.814
arnt2
Aryl hydrocarbon receptor nuclear translocator 2 isoform X2.
   
 0.814
ubxn7
UBX domain-containing protein 7.
    
  0.765
vhl
Von Hippel-Lindau disease tumor suppressor.
    
 0.746
LOC108269665
Photoreceptor outer segment membrane glycoprotein 2-like.
      
 0.731
LOC108258119
Photoreceptor outer segment membrane glycoprotein 2-like.
      
 0.731
cul2
Cullin-2 isoform X1; Belongs to the cullin family.
    
 0.682
eloc
Transcription elongation factor B polypeptide 1 isoform X1; Belongs to the SKP1 family.
    
 0.668
LOC108280902
Transcription elongation factor B polypeptide 2-like.
    
 0.624
elob
Transcription Elongation factor B polypeptide 2.
    
 0.624
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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