Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108275732FYVE and coiled-coil domain-containing protein 1-like isoform X1. (1508 aa)    
Predicted Functional Partners:
rab7a
Ras-related protein Rab-7a.
    
 0.912
LOC108271868
Ras-related protein Rab-7a-like.
    
 0.912
LOC108254780
Ras-related protein Rab-7a.
    
 0.912
LOC108280757
FYVE and coiled-coil domain-containing protein 1-like isoform X1.
  
  
 
0.903
sass6
Spindle assembly abnormal protein 6 homolog isoform X1.
    
 
 0.851
klc4
Kinesin light chain 4 isoform X2.
    
 0.686
KIF5C
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.686
klc1
Kinesin light chain 1 isoform X7.
    
 0.686
klc3
Kinesin light chain 3 isoform X3.
    
 0.686
klc2
Kinesin light chain 2.
    
 0.686
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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