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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdm13PR domain zinc finger protein 13. (574 aa)    
Predicted Functional Partners:
pole
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 
 0.548
ptf1a
Pancreas transcription factor 1 subunit alpha.
   
 
 0.500
LOC108276618
T-cell leukemia homeobox protein 3-like.
    
 0.458
arl15
ADP-ribosylation factor-like protein 15 isoform X1.
    
 0.411
bhlhe22
Class E basic helix-loop-helix protein 22.
    
 
 0.411
LOC108276853
ADP-ribosylation factor-like protein 15.
    
 0.411
slc38a7
Putative sodium-coupled neutral amino acid transporter 7.
    
 0.407
ccnc
cyclin-C isoform X1; Belongs to the cyclin family.
    
 
 0.402
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.